This whole passage is a bit of a train-wreck, when it comes to clearly understanding the different soil plots being discussed.
In paragraph 2, we get a former cornfield divided into 20 plots, but we really have 4 categories of what researchers were investigating:
"Control plots"
- plots that were re-sown with corn
- plots that were sown with nothing
"Experimental plots"
- plots that were sown with mix of native plants
- plots that were sown with mix of native plants AND clover/toadflax
In paragraph 3, they start telling us that on some of the Experimental plots (they don't tell us whether it was the ones with clover/toadflax, without, or both), they added soil from nearby land that had been taken out of production 20 years earlier.
So really we have
"Experimental plots"
- plots that were sown with mix of native plants
- plots that were sown with mix of native plants AND clover/toadflax
- plots that were sown with mix of native plants (and maybe clover/toadflax) AND sown with soil from nearby land that has had 20 yrs. to hit "later stages of natural soil development".
This last category is referred to as the "enriched" plots. Line 42 is saying the enriched plots did better than unenriched (#1 and 2 in our list of Experimental plots), but worse than the nearby land. "Nearby land" = line 36, the land taken out of production 20 years earlier.
As you said, line 44 is then where we get the justification for (B).
And as I said, this passage is really hard to read, once we get to paragraphs 2 and 3, because the author keeps referring backwards to concepts he's mentioned, but using often confusing terminology to do so.
In Paragraph 2, he uses "fewer seed varieties" / "broadest seed varieties" / and "control plots" to refer back to his different categories.
In Paragraph 3, he uses "enriched" vs. "non-enriched" and "nearby land" as the keywords to refer back to his different categories.
One very subtle clue that his reference to nearby land in line 44 is a specific call-back, not just vague wording, is that he says "THE nearby land".
If he weren't referring back to a previously mentioned "nearby land", he would have just said "those growing naturally on nearby land".
You can tell when it comes down to "the" or no-"the", that we have reached a point of awfulness.

Hope this helps.